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projects [2022/08/15 05:41] 167.114.64.97 alte Version wiederhergestellt (2021/12/17 02:31) |
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- | ======Projects====== | + | ======PiGMo10====== |
- | A folder with subfolders which includes a set of xml-files to describe what to do with a dataset (session, a set of trials, typcially with c3d-files) is called a " | + | |
- | =====PiGMo10 Vicon PiG based===== | + | |
- | This is a clone of what the PiGMo10 " | + | This is a clone of what the PiGMo10 " |
+ | ======Gait with functional centers/ | ||
- | So the complete pipeline from the raw data, to the sheets up to the exported hd-asc files, used by **HeiDataProVIT**, is possible | + | This projects add functional center/axes determination |
- | Extensive testing and finetuning is needed, | + | Additional |
- | The lower body kinematics angles of this project are described [[http:// | + | To process the data specific dynamic calibration trials must be done and its specific eclipse entries must be set: |
- | =====PiGMo10 independent===== | + | |
- | + | ||
- | Additional to the above this also includes a Vicon PiG kinematics clone. This makes the project completly independent from Vicon codebase, for full flexibility. | + | |
- | + | ||
- | =====PiG with functional centers/ | + | |
- | + | ||
- | This project adds functional center/axes determination to the default Vicon PlugInGait model. It works together with the old **Vicon Workstation** and also with new Vicon **Nexus system**. | + | |
- | + | ||
- | Additional to the SCoRE/SARA functional method implementation of Vicon, several mathematical methods are available and the phases, which are used as input for the estimation, can be controlled by setting of events in the dynamic calibration trials. | + | |
- | + | ||
- | ====Eclipse entries==== | + | |
- | To process the data, specific dynamic calibration trials must be done and its specific eclipse entries must be set: | + | |
^ Name ^ Value ^ Description ^ | ^ Name ^ Value ^ Description ^ | ||
- | ^ CLASS | Static_Cal | Static standing trial, typically used with knee alignment device. | | + | ^ CLASS | Static_Cal | Static standing trial, typically used with knee alignment device | |
- | ^ CLASS | HipCircle | Optional, if HipFlex/Ext and HipAbd/Add are both available. | | + | |
- | ^ CLASS | HipFlex/Ext | Flexion/ | + | |
- | ^ CLASS | HipAbd/Add | Optional, if HipCircle and HipFlex/Ext are both available. | | + | |
- | ^ TYPE | PiG, PiGFunctional | Indicates, if the trial is processed with PiG or with functional-PiG (Vicon implementation of SARA and ScoRE). | + | |
^ SIDE | Side R, Side L, bds | | | ^ SIDE | Side R, Side L, bds | | | ||
{{ : | {{ : | ||
- | |||
- | ====Modelparameter files==== | ||
- | Modelparameter-files are needed to read parameters from clinical measurements, | ||
- | |||
- | There is an important limitation in the mechanism to work with these files: You can have an mp-file only for each session and not for each group. That is why the mp-files are found only, if they are saved in the session and not in the group. Details of working with .mp-files and its limitations you can find [[http:// | ||
- | |||
- | Used parameters are: | ||
- | |||
- | < | ||
- | $LKneeWidth = 103 | ||
- | $LAnkleWidth = 71 | ||
- | $LTibialTorsion = -15 | ||
- | $RKneeWidth = 104 | ||
- | $RAnkleWidth = 71 | ||
- | $RTibialTorsion = -15 | ||
- | </ | ||
- | =====PiG with functional knee joint axes only ===== | ||
- | |||
- | This project adds functional knee joint axes determination (SARA) only to the default Vicon PlugInGait model. It works together with the old Vicon Workstation system and allows to control the usage of the motion phases, which are used for the estimation by setting of events. | ||
- | |||
- | In the gait trials the lateral knee markers are projected onto the functional knee joint axes and the knee joint center is determined based on the clinical measurement of the knee width. Than the femur coordinate system is constructed equivalent to the original PiG. Keep in mind that this coordinate system does not have the functional axis as one of its axes. The axes are defined by cross products and have the longitudinal femur axes included. | ||
- | |||
- | The proximal tibia (anatomical) coordinate systems are defined by PiG virtual markers. | ||
- | |||
- | ==== Preconditions ==== | ||
- | * It is assumed, that the Vicon PiG is processed for the static calibration trial and all gait trials, before processing with this model. Vicon PiG processing is not needed for the dynamic calibration trials. | ||
- | * Additional markers on the shank are needed. Have a look at the follwing markerset picture | ||
- | * Specific dynamic calibration movements with knee flexion; events to define the phases used by the estimation. | ||
- | * Specific eclipse entries. Have a look at the following table and screenshot. | ||
- | |||
- | ==== Markerset ==== | ||
- | |||
- | {{ : | ||
- | ====Eclipse entries==== | ||
- | To process the data, specific dynamic calibration trials must be available and its specific eclipse entries must be set: | ||
- | |||
- | ^ Trial ^ Name ^ Value ^ Description ^ | ||
- | ^ 1 | CLASS | Static_Cal | Static standing trial with knee alignment device. | | ||
- | ^ 2 | CLASS | HipFlex/Ext | Flexion/ | ||
- | ^ all trials | SIDE | Side R, Side L, bds | Hip/ | ||
- | ^ 3-n | CLASS | Dynamic or Dynamic+Kinetics | Trial with gait, Strides defined by events. | | ||
- | {{ : | ||
- | |||
- | ====Modelparameter files==== | ||
- | Modelparameter-files are needed to read parameters from clinical measurements, | ||
- | |||
- | There is an important limitation in the mechanism to work with these files: You can have an mp-file only for each session and not for each group. That is why the mp-files are found only, if they are saved in the session and not in the group. Details of working with .mp-files and its limitations you can find [[http:// | ||
- | |||
- | Used parameters are: | ||
- | |||
- | < | ||
- | $LKneeWidth = 103 | ||
- | $RKneeWidth = 104 | ||
- | </ | ||
- | |||
- | ==== Output ==== | ||
- | |||
- | In the default configuration the output is written into " | ||
- | |||
- | Hip- and knee-angles are saved to its corresponding PiG angles with the same names but based on the functional knee joint axes. | ||
- | |||
- | ^ Name ^ Description ^ | ||
- | ^ R/ | ||
- | ^ R/ | ||
- | |||
- | You can change the output behavoir in the calcml.xml file in the subfolder " | ||
- | |||
- | <code xml> | ||
- | < | ||
- | < | ||
- | <entry key=" | ||
- | < | ||
- | </ | ||
- | < | ||
- | <entry key=" | ||
- | <entry key=" | ||
- | </ | ||
- | <input labelset=" | ||
- | < | ||
- | </ | ||
- | <output labelset=" | ||
- | handlerclass=" | ||
- | </ | ||
- | < | ||
- | </ | ||
- | </ | ||
- | |||
- | In this code snipset the the output is done by the " | ||
- | ==== Process Log ==== | ||
- | The logging output is shown in a seperate window typically shown at the buttom of the application. If this window is not shown you can reopen it by the corresponding action in the Windows-main-menu. | ||
- | |||
- | The following picture shows a part of the logging output of processing a session. The messages in black are only for information. The blue ones are warning. If there are red ones, something is totally wrong. | ||
- | |||
- | {{ : | ||
- | |||
- | You can see Intervals of frames defined by start- and end-frame enclosed in "[ ; ]". In these intervals the calculation cauld not be done. Typically the origin of this are unlabled markers. You should go to Vicon Worstation to check this. | ||
- | |||
- | The information about the differences between PiG and functional PiG, given as an direction cosine angle between the corresponding two knee joint axes is print in blue but typically there is nothing wrong. But you should always have a look at it. If the differences is hight you should think about if this can be correct. |